Ex Parte Brookes - Page 14


                  Appeal No.  2006-0258                                                             Page 14                    
                  Application No.  09/755,747                                                                                  

                          In response appellant asserts (Brief, page 16), Stimpson “emphasize that                             
                  fluorescent-based systems are insensitive and therefore provides an alternative                              
                  optical wave guide system which improves sensitivity.”  According to appellant                               
                  (17), the optical wave guide system taught by Stimpson is completely different                               
                  than using a fluorescent-based system and therefore a person of ordinary skill in                            
                  the art would not have been motivated to modify Stimpson for use with a                                      
                  fluorescent dye like that taught by Wittwer.  In addition, appellant asserts (id.),                          
                  Wittwer does not suggest or employ the SYBR Green dye in a “solid-phase                                      
                  hybridization, which is the subject of the present claims.”  In support of this                              
                  assertion appellant relies on the Baldeschwieler Declaration and the Kwok                                    
                  Declaration.                                                                                                 
                          Initially, we note that Baldeschwieler declares that he was the senior                               
                  investigator and coauthor of Stimpson.  Baldeschwieler Declaration, paragraph 1.                             
                  In this regard, Baldeschwieler declares (Baldeschwieler Declaration, paragraph                               
                  2),                                                                                                          
                          Both before and after the publication of Stimpson . . ., one skilled in                              
                          the art would not expect the DNA binding capacity of any of the                                      
                          stable and common 2-D surfaces and chemistries to yield                                              
                          sufficiently strong fluorescent signals sufficiently ‘instantly’                                     
                          (sub0second0 in f fluorescence based assay method to allow for                                       
                          dynamic tracking of signal changes in real-time, when applying                                       
                          practically useful rates of heating.  One skilled in the art would,                                  
                          therefore, most rationally turn to 3-D (gel-type) arrays to solve this                               
                          widely recognized problem, since the considerable 3rd dimension                                      
                          provides far greater capacity and scope for DNA binding and                                          
                          manipulation.                                                                                        









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