Ex parte COVEY et al. - Page 2




          Appeal No. 95-2726                                                          
          Application 07/994,477                                                      
          appeal and reads as follows:                                                



               1.   A method of analyzing a protein comprising the steps              
          of:                                                                         
               (1) adding trypsin to said protein to form a liquid phase              
          mixture of trypsin and said protein;                                        
                                                                                     
               (2) optionally reducing the disulfide linkages and                     
          alkylating the resulting sulfhydryl groups of said protein                  
          either before or after said step (1);                                       
               (3) allowing the trypsin to digest said protein long                   
          enough to cleave said protein into tryptic fragments of less                
          than 4000 daltons in said liquid phase;                                     
               (4) ionizing a portion of the digested mixture by ion                  
          evaporation to produce gas phase ions of said tryptic                       
          fragments from said liquid phase, said gas phase ions being                 
          predominantly doubly charged with one charge at each end of                 
          said double charged ions,                                                   
               (5) and analyzing said gas phase ions of said tryptic                  
          fragments by sequentially selecting therefrom doubly charged                
          ions in a first mass analyzer, fragmenting such selected ions               
          by collision in a second mass analyzer to produce daughter                  
          ions, and then analyzing said daughter ions in a third mass                 
          analyzer.                                                                   

               The references relied on by the examiner are:                          
          Henion et al. (Henion)        4,861,988           Aug. 29, 1989             
                                                  (filed Sept. 30, 1987)              
          Yost et al. (Yost), “Triple Quadrupole Mass Spectrometry for                
          Direct Mixture Analysis and Structure Elucidation,”                         
          Anal. Chem., vol. 51, pp. 1251A-1264A (1979).                               
          Vestal, “High-Performance Liquid Chromatography-Mass                        
          Spectrometry,” Science, vol. 226, pp. 275-281 (1984).                       
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