Appeal No. 95-2726 Application 07/994,477 appeal and reads as follows: 1. A method of analyzing a protein comprising the steps of: (1) adding trypsin to said protein to form a liquid phase mixture of trypsin and said protein; (2) optionally reducing the disulfide linkages and alkylating the resulting sulfhydryl groups of said protein either before or after said step (1); (3) allowing the trypsin to digest said protein long enough to cleave said protein into tryptic fragments of less than 4000 daltons in said liquid phase; (4) ionizing a portion of the digested mixture by ion evaporation to produce gas phase ions of said tryptic fragments from said liquid phase, said gas phase ions being predominantly doubly charged with one charge at each end of said double charged ions, (5) and analyzing said gas phase ions of said tryptic fragments by sequentially selecting therefrom doubly charged ions in a first mass analyzer, fragmenting such selected ions by collision in a second mass analyzer to produce daughter ions, and then analyzing said daughter ions in a third mass analyzer. The references relied on by the examiner are: Henion et al. (Henion) 4,861,988 Aug. 29, 1989 (filed Sept. 30, 1987) Yost et al. (Yost), “Triple Quadrupole Mass Spectrometry for Direct Mixture Analysis and Structure Elucidation,” Anal. Chem., vol. 51, pp. 1251A-1264A (1979). Vestal, “High-Performance Liquid Chromatography-Mass Spectrometry,” Science, vol. 226, pp. 275-281 (1984). 2Page: Previous 1 2 3 4 5 6 7 NextLast modified: November 3, 2007