Ex parte PERGOLIZZI et al. - Page 23




          Appeal No. 95-3606                                                          
          Application 07/827,691                                                      
               c) “a PCR reaction mixture which is substantially free of              
          added GTP or dGTP.”                                                         
               In Fig. 1. (A), Kremer describes the following (Kremer,                
          p. 1712):                                                                   
               DNA sequence of 1.03-kb Pst I fragment containing the                  
               p(CCG)  trinucleotide repeat. . . . For sequencing, the                
                     n                                                                
               1.03-kp Pst I restriction endonuclease fragment was                    
          isolated                                                                    
               from pfxa1 and subcloned into the Pst I site in M13 mp18.              
               . . . The 530-bp Nhe I to Pst I restriction endonucleases              
               fragment was also isolated from pfxa1 and subcloned in                 
          both                                                                        
               orientations into Xba 1-Pst I sites in M13 mp18 and 19.                
               The difficulties in isolating M13 clones that spanned the              
               p(CCG)  repeat in the reverse direction led us to use                  
                     n                                                                
               double-stranded sequencing of pfxa2 using oligo-                       
               deoxyribonucleotide primers #201, 203, 204, 209, and                   
               213.  All sequencing was performed with Sanger’s dideoxy               
               method and with TAQuence sequencing kit (U.S Biochemical               
               Corp.).  Because of high CG content of the template DNA,               
               samples were routinely prepared with 7-deaza-dGTP,                     
          denatured                                                                   
               in a final concentration of 50% formamide at 90 C for 5O                       
          min.                                                                        
               and loaded onto sequencing gels immediately without                    
          allowing                                                                    
               to cool.                                                               
          Based on Fig. 1 and Kremer’s teaching at column 1, paragraph                
          bridging columns 1 and 2, to column 4, paragraph bridging                   
          columns 3 and 4, we find that Kremer describes a method for                 
          sequencing a 1.03-kb Pst I PCR DNA fragment containing the                  
          p(CCG)  fragile X trinucleotide repeat using at least one PCR               
                n                                                                     
          primer capable of hybridizing to nucleic acid sequences                     
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