Ex parte PERGOLIZZI et al. - Page 12




          Appeal No. 95-3606                                                          
          Application 07/827,691                                                      
               PCR the 201 and 214 primers (Fig. 2) were utilized.  The               
               products of this reaction were used as template for the                
               second-stage 203- and 213-primed PCR.  The products of                 
               these reactions were then subcloned into M13 for sequence              
               analysis.  This analysis revealed that only the length of              
               the repeat sequences varied--the flanking sequences                    
          between                                                                     
               the PCR primers and the repeat remaining the same (Fig.                
          1B).                                                                        
               In all cases the cloned PCR products were substantially                
               shorter than anticipated, particularly since the fragile               
          X                                                                           
               individuals had large insertions or amplifications of                  
               sequences in this region . . . .                                       
               Fig. 3 is a “Southern blot analysis with fragile X-                    
          affected and normal males” (Kremer, p. 1713, Fig. 3):                       
               Total genomic DNA from lymphocytes was extracted and                   
               purified.  A portion of each sample . . . was digested                 
               to completion with (A)Pvu II and Bam HI, (B) Pvu II and                
               Nhe I, (C) Sau 3AI, (D) PST I and Rsa I.  Lanes 1, 2,                  
               and 5 are from affected males.  Lanes 3 and 4 are from                 
               normal males.  Samples were separated by electrophoresis               
               on a 1.3% agarose gel and transferred to Hybond N+                     
          blotting                                                                    
               membrane (Amersham).  The probe pfxa4 was P-labeled by32                           
               random priming and hybridized to the blots . . . and                   
               exposed to Xomat XK-1 film . . . .                                     
               On analysis, Kremer states (Kremer, p. 1713, col. 2, to                
          p.1714, col. 1; emphasis added):                                            
                    We have concluded from all the experimental evidence              
               that the unstable DNA sequence which characterizes the                 
               fragile X genotype maps to the p(CCG)  trinucleotide                   
                                                    n                                 
          repeat.                                                                     
               We have demonstrated that normal X chromosomes have about              
               40 + 25 copies of p(CCG)  and that within these limits                 
                                       n                                              
               the sequence is a stable DNA polymorphism.  The fragile X              

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